species:   Fugra
pid:       PID0923
parent:    FgmilR-7dps-32
paralog:   
locus:     NC_026475.1:8710054-8710112
matures:   ['UACUUGAGAUCCUGACAAGAGG', 'AACGUCACUUCCCAAAUGCC']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026475.1:8710054-8710112

9 out of bounds
13 alignments
13 proper strand
11 stranded perfect matches

   **********************       ************************   
AGGUCAACGUCACUUCCCAAAUGCCAGAACAAGGUACUUGAGAUCCUGACAAGAGGCCU
(((((...((((..((.(((.((((.......)))).))).))...))))....)))))
----------------------------------UACUUGAGAUCCUGACAAGAGG--- l=22 a=11 c
-----AACGUCACUUCCCAAAUGCC---------------------------------- l=20 a=0 c*
----------------------------------UACUUGAGAUCCUGACAAGAGG--- l=22 a=11 ma
-----AACGUCACUUCCCAAAUGCC---------------------------------- l=20 a=0 ma*

----------------------------------UACUUGAGAUCCUGACAAGAGG--- l=22 a=11 (c,ma)
----------------------------------UACUUGAGAUaCUGACAAGAGG--- l=22 a=1 
----------------------------------UACUUGAGAUCCUGACAAuAGG--- l=22 a=1 

mb-01011
ax-1001111
ku-01
ss-111111101110
fn-111
